compKcSigRegions-class

show,compKcSigRegions-method

	A matrix containing the results the significant regions for a given compKc object and FDR.

classes

Multi sample aCGH analysis package using kernel
convolution

Jorma de Ronde

KCsmart

Multi sample aCGH analysis package using kernel convolution

compKcSigRegions-class function

Objects can not be created by the user directly but rather through getSigRegionsCompKC.

Objects from the Class

<dl>
    <dt><code>regionTable</code>:</dt><dd>The significant regions</dd> <dt><code>method</code>:</dt><dd>The method used to create the null distribution</dd> <dt><code>cutoff</code>:</dt><dd>The cutoff for the given false discovery rate which was used to determine the significant regions</dd> <dt><code>fdr</code>:</dt><dd>The false discovery rate used to determine the significant regions</dd> </dl> 

Slots

<dl>
    <dt>show</dt><dd><code>signature(object = "compKcSigRegions")</code>: ... </dd> <dt>write.table</dt><dd><code>signature(object = "compKcSigRegions")</code>: ... </dd> </dl> 

Methods

A matrix containing the results the significant regions for a given compKc object and FDR.

compKcSigRegions-class: KC smart comparative

Description

Arguments

Objects from the Class

Slots

Methods

Examples