spmCollection-class

show,spmCollection-method

	A sample point matrix collection resulting from a call to calcSpmCollection

classes

Multi sample aCGH analysis package using kernel
convolution

Jorma de Ronde

KCsmart

Multi sample aCGH analysis package using kernel convolution

spmCollection-class function

Objects can not be created by the user directly but rather through calcSpmCollection.

Objects from the Class

<dl>
    <dt><code>annotation</code>:</dt><dd>The annotation (containing the chromosome and position on the chromosome) for the sample points in the 'data' slot</dd> <dt><code>data</code>:</dt><dd>A matrix with the kernel smoothed estimates of all samples</dd> <dt><code>cl</code>:</dt><dd>A class vector indicating which samples belong to which class</dd> <dt><code>sampleDensity</code>:</dt><dd>The sample density used to calculate the sample point matrix. ie the distance between two points in the sample point matrix, measured in base pairs. </dd> <dt><code>sigma</code>:</dt><dd>The sigma used for the kernel to calculate the sample point matrix.</dd> <dt><code>mirrorLocs</code>:</dt><dd>The mirror locations list used to calculate the sample point matrix</dd> </dl> 

Slots

<dl>
    <dt>show</dt><dd><code>signature(object = "spmCollection")</code>: ... </dd> </dl> 

Methods

A sample point matrix collection resulting from a call to calcSpmCollection

spmCollection-class: Sample point matrix collection

Description

Arguments

Objects from the Class

Slots

Methods

Examples