KEGGREST v1.12.2

Client-side REST access to KEGG

A package that provides a client interface to the KEGG REST server. Based on KEGGSOAP by J. Zhang, R. Gentleman, and Marc Carlson, and KEGG (python package) by Aurelien Mazurie.

Functions in KEGGREST

Name Description
keggInfo Displays the current statistics of a given database
keggConv Convert KEGG identifiers to/from outside identifiers
listDatabases Lists the KEGG databases which may be searched.
mark.pathway.by.objects Client-side interface to obtain an url for a KEGG pathway diagram with a given set of genes marked
keggLink Find related entries by using database cross-references.
keggList Returns a list of entry identifiers and associated definition for a given database or a given set of database entries.
keggFind Finds entries with matching query keywords or other query data in a given database
keggGet Retrieves given database entries
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Details

License Artistic-2.0
VignetteBuilder knitr
biocViews Annotation, Pathways, ThirdPartyClient, KEGG

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