getDisplayName

getDisplayName-methods

getDisplayName,KEGGNode-method

getDisplayName,graph-method


  In KGML files, 'graph' element has a 'name' attribute to store the
  displaying name of a node, which is straighforward for end users. For
  example, biologists have no idea about a node 'hsa:1432' but its
  display name 'MAPK14' helps them to link this node to their knowledge.
  This method extract DisplayName from graph objects for KEGGNode and graph, where the
  method for graph returns the display names of its nodes.


methods

KEGGGraph is an interface between KEGG pathway and graph
object as well as a collection of tools to analyze, dissect and
visualize these graphs. It parses the regularly updated KGML
(KEGG XML) files into graph models maintaining all essential
pathway attributes. The package offers functionalities
including parsing, graph operation, visualization and etc.

Jitao David Zhang

KEGGgraph

KEGGgraph: A graph approach to KEGG PATHWAY in R and
Bioconductor

getDisplayName-methods function

<dl>
    <dt>object = "KEGGNode"</dt><dd> An object of <code><a rd-options="" href="/link/KEGGNode-class?package=KEGGgraph&version=1.30.0" data-mini-rdoc="KEGGgraph::KEGGNode-class">KEGGNode-class</a></code> </dd> <dt>object = "graph"</dt><dd> A KEGG graph object</dd> </dl>

Methods

In KGML files, 'graph' element has a 'name' attribute to store the
  displaying name of a node, which is straighforward for end users. For
  example, biologists have no idea about a node 'hsa:1432' but its
  display name 'MAPK14' helps them to link this node to their knowledge.
  This method extract DisplayName from graph objects for KEGGNode and graph, where the
  method for graph returns the display names of its nodes.

getDisplayName-methods: Get a character string as label for display

Description

Arguments

Methods

References

Examples