getPathwayInfo

getPathwayInfo-methods

getPathwayInfo,KEGGPathway-method


  KEGG stores additional information of the pathways in their KGML
  files, which can be extracted by this function.<p></p><p>  The method returns the attributes of the pathway including its full
  title, short name, organism, image file link (which can be downloaded
  from KEGG website) and web link.
</p>

methods

KEGGGraph is an interface between KEGG pathway and graph
object as well as a collection of tools to analyze, dissect and
visualize these graphs. It parses the regularly updated KGML
(KEGG XML) files into graph models maintaining all essential
pathway attributes. The package offers functionalities
including parsing, graph operation, visualization and etc.

Jitao David Zhang

KEGGgraph

KEGGgraph: A graph approach to KEGG PATHWAY in R and
Bioconductor

getPathwayInfo-methods function

<dl>
<dt>object = "KEGGPathway"</dt><dd> An object of
  <code><a rd-options="" href="/link/KEGGPathway-class?package=KEGGgraph&version=1.30.0" data-mini-rdoc="KEGGgraph::KEGGPathway-class">KEGGPathway-class</a></code> </dd> </dl>

Methods

KEGG stores additional information of the pathways in their KGML
  files, which can be extracted by this function.

  The method returns the attributes of the pathway including its full
  title, short name, organism, image file link (which can be downloaded
  from KEGG website) and web link.

getPathwayInfo-methods: Get KEGG pathway info

Description

Arguments

Methods

Examples