subtypeDisplay

subtypeDisplay-methods

subtypeDisplay,graph-method

subtypeDisplay,KEGGEdge-method

subtypeDisplay,KEGGEdgeSubType-method


  To render KEGG pathway graphs, we have created a custom style of edges
  to represent their subtypes. 'subtypeDisplay' extracts this information


methods

KEGGGraph is an interface between KEGG pathway and graph
object as well as a collection of tools to analyze, dissect and
visualize these graphs. It parses the regularly updated KGML
(KEGG XML) files into graph models maintaining all essential
pathway attributes. The package offers functionalities
including parsing, graph operation, visualization and etc.

Jitao David Zhang

KEGGgraph

KEGGgraph: A graph approach to KEGG PATHWAY in R and
Bioconductor

subtypeDisplay-methods function

<dl> <dt>object = "graph"</dt><dd> An KEGG graph </dd> <dt>object = "KEGGEdge"</dt><dd> An object of <code><a rd-options="" href="/link/KEGGEdge-class?package=KEGGgraph&version=1.30.0" data-mini-rdoc="KEGGgraph::KEGGEdge-class">KEGGEdge-class</a></code> </dd> <dt>object = "KEGGEdgeSubType"</dt><dd>  An object of
  <code><a rd-options="" href="/link/KEGGEdgeSubType-class?package=KEGGgraph&version=1.30.0" data-mini-rdoc="KEGGgraph::KEGGEdgeSubType-class">KEGGEdgeSubType-class</a></code>  </dd> </dl>

Methods

To render KEGG pathway graphs, we have created a custom style of edges
  to represent their subtypes. 'subtypeDisplay' extracts this information

subtypeDisplay-methods: Get display information for relation subtypes

Description

Arguments

Methods