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KOGMWU (version 1.0)

Functional Summary and Meta-Analysis of Gene Expression Data

Description

Rank-based tests for enrichment of KOG (euKaryotic Orthologous Groups) classes with up- or down-regulated genes based on a continuous measure. The meta-analysis is based on correlation of KOG delta-ranks across datasets (delta-rank is the difference between mean rank of genes belonging to a KOG class and mean rank of all other genes). With binary measure (1 or 0 to indicate significant and non-significant genes), one-tailed Fisher's exact test for over-representation of each KOG class among significant genes will be performed.

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Install

install.packages('KOGMWU')

Monthly Downloads

119

Version

1.0

License

GPL-3

Maintainer

Last Published

March 5th, 2015

Functions in KOGMWU (1.0)