adults.3dHeat.logFoldChange

Acropora millepora (adult) response to three days of heat stress (31.5oC)
log-fold-changes inferred using DESeq package from tag-based RNA-seq data.

Rank-based tests for enrichment of KOG (euKaryotic Orthologous Groups) classes with up- or down-regulated genes based on a continuous measure. The meta-analysis is based on correlation of KOG delta-ranks across datasets (delta-rank is the difference between mean rank of genes belonging to a KOG class and mean rank of all other genes). With binary measure (1 or 0 to indicate significant and non-significant genes), one-tailed Fisher's exact test for over-representation of each KOG class among significant genes will be performed.

Mikhail Matz

KOGMWU

Functional Summary and Meta-Analysis of Gene Expression Data

adults.3dHeat.logFoldChange function

A data frame with 44363 observations on the following 2 variables.<dl class="dl-horizontal">
 <dt><code>gene</code></dt><dd>gene id, a factor with 44363 levels</dd>
 <dt><code>lfc</code></dt><dd>log fold-change, a numeric vector</dd>
 </dl>

Format

Heat stress response of adult coral — adults.3dHeat.logFoldChange

A data frame with 44363 observations on the following 2 variables.<dl class='dl-horizontal'>
 <dt><code>gene</code></dt><dd>gene id, a factor with 44363 levels</dd>
 <dt><code>lfc</code></dt><dd>log fold-change, a numeric vector</dd>
 </dl>

adults.3dHeat.logFoldChange: Heat stress response of adult coral

Description

Usage

Arguments

Format