gene2kog

KOG class annotations for Acropora millerpoa transcriptome.

Rank-based tests for enrichment of KOG (euKaryotic Orthologous Groups) classes with up- or down-regulated genes based on a continuous measure. The meta-analysis is based on correlation of KOG delta-ranks across datasets (delta-rank is the difference between mean rank of genes belonging to a KOG class and mean rank of all other genes). With binary measure (1 or 0 to indicate significant and non-significant genes), one-tailed Fisher's exact test for over-representation of each KOG class among significant genes will be performed.

Mikhail Matz

KOGMWU

Functional Summary and Meta-Analysis of Gene Expression Data

gene2kog function

A data frame with 16175 observations on the following 2 variables.<dl class="dl-horizontal">
 <dt><code>V1</code></dt><dd>a factor with 16175 levels</dd>
 <dt><code>V2</code></dt><dd>a factor with 23 levels</dd>
 </dl>

Format

KOG class annotations — gene2kog

A data frame with 16175 observations on the following 2 variables.<dl class='dl-horizontal'>
 <dt><code>V1</code></dt><dd>a factor with 16175 levels</dd>
 <dt><code>V2</code></dt><dd>a factor with 23 levels</dd>
 </dl>

gene2kog: KOG class annotations

Description

Usage

Arguments

Format

References