larvae.longTerm

Acropora millepora (larvae) response to five days of heat stress (31.5oC)
log-fold-changes inferred using DESeq package from tag-based RNA-seq data 
from Meyer et al Mol Ecol 2011,17:3599-3616

Rank-based tests for enrichment of KOG (euKaryotic Orthologous Groups) classes with up- or down-regulated genes based on a continuous measure. The meta-analysis is based on correlation of KOG delta-ranks across datasets (delta-rank is the difference between mean rank of genes belonging to a KOG class and mean rank of all other genes). With binary measure (1 or 0 to indicate significant and non-significant genes), one-tailed Fisher's exact test for over-representation of each KOG class among significant genes will be performed.

Mikhail Matz

KOGMWU

Functional Summary and Meta-Analysis of Gene Expression Data

larvae.longTerm function

A data frame with 31844 observations on the following 2 variables.<dl class="dl-horizontal">
 <dt><code>gene</code></dt><dd>gene id, a factor with 31844 levels</dd>
 <dt><code>lfc</code></dt><dd>log fold-change, a numeric vector</dd>
 </dl>

Format

Long-term heat stress response of coral larvae — larvae.longTerm

A data frame with 31844 observations on the following 2 variables.<dl class='dl-horizontal'>
 <dt><code>gene</code></dt><dd>gene id, a factor with 31844 levels</dd>
 <dt><code>lfc</code></dt><dd>log fold-change, a numeric vector</dd>
 </dl>

larvae.longTerm: Long-term heat stress response of coral larvae

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