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Keyboard (version 0.1.3)

Bayesian Designs for Early Phase Clinical Trials

Description

We developed a package 'Keyboard' for designing single-agent, drug-combination, or phase I/II dose-finding clinical trials. The 'Keyboard' designs are novel early phase trial designs that can be implemented simply and transparently, similar to the 3+3 design, but yield excellent performance, comparable to those of more-complicated, model-based designs (Yan F, Mandrekar SJ, Yuan Y (2017) , Li DH, Whitmore JB, Guo W, Ji Y. (2017) , Liu S, Johnson VE (2016) , Zhou Y, Lee JJ, Yuan Y (2019) , Pan H, Lin R, Yuan Y (2020) ). The 'Keyboard' package provides tools for designing, conducting, and analyzing single-agent, drug-combination, and phase I/II dose-finding clinical trials. For more details about how to use this packge, please refer to Li C, Sun H, Cheng C, Tang L, and Pan H. (2022) "A software tool for both the maximum tolerated dose and the optimal biological dose finding trials in early phase designs". Manuscript submitted for publication.

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Version

Install

install.packages('Keyboard')

Monthly Downloads

172

Version

0.1.3

License

GPL-2

Maintainer

Xiaomeng Yuan

Last Published

August 11th, 2022

Functions in Keyboard (0.1.3)

decision.finding

Return Dose Escalation or De-escalation Decision Given Number of Toxicity and Responses
get.decision.obd2.kb

Automatic Boundary and Decision Tables for Phase I/II Trials.
get.oc.comb.kb

Operating Characteristics for Drug-combination Trials
get.boundary.kb

Dose Escalation or De-escalation Boundaries for Single-agent Trials
get.boundary.comb.kb

Dose Escalation or De-escalation Boundaries for Drug-combination Trials
get.oc.kb

Operating Characteristics for Single-agent Trials
get.decision.obd.kb

Boundary Table and Decision Matrix for Phase I/II Trials.
example.kb

Illustration of the Keyboard Design (Single-agent)
get.oc.obd.kb

Generate Operating Characteristics to Find the Optimal Biological Dose
get.oc.obd2.kb

Generate Operating Characteristics for OBD Finding Automaticallly
select.obd.kb

Select the Optimal Biological Dose (OBD) for Single-agent Phase I/II Trials
select.mtd.comb.kb

Maximum Tolerated Dose (MTD) Selection for Drug-combination Trials
select.mtd.kb

Maximum Tolerated Dose (MTD) Selection for Single-agent Trials
next.comb.kb

Find the Next Dose Combination
summary_kb

Summarize Objects Generated by the Keyboard Design Package
plot_kb

Plot Objects Generated by the Keyboard Design Package