checkdata

Check input data used by KinMix for absences of required markers or allele values.

Methods for inference about/under complex relationships using
peak height data from DNA mixtures: the most basic example would be testing whether a contributor to
a mixture is the father of a child of known genotype. This provides most of the functionality
of the 'KinMix' package, but with some loss of efficiency and restriction on problem size,
as the latter uses 'RHugin' as the Bayes net engine, while this package uses 'gRain'.
The package implements the methods introduced in
Green, P. J. and Mortera, J. (2017) <doi:10.1016/j.fsigen.2017.02.001> and
Green, P. J. and Mortera, J. (2021) <doi:10.1111/rssc.12498>.

Peter Green

KinMixLite

Inference About Relationships from DNA Mixtures

checkdata function

<dl> <dt>epg</dt>
<dd>data frame, the epg; see <code>formats</code>.</dd> <dt>database</dt>
<dd>data frame, the db; see <code>formats</code>.</dd> <dt>typed.gts</dt>
<dd>named list of genotype objects; see <code>formats.</code></dd> <dt>reference.profiles</dt>
<dd>data frame containing reference.profiles in DNAmixtures format</dd></dl>

Arguments

Peter Green (P.J.Green@bristol.ac.uk)

Author

Check data for absences of markers or allele values — checkdata

<dl>

 <dt>epg</dt>
<dd>data frame, the epg; see <code>formats</code>.</dd>

 <dt>database</dt>
<dd>data frame, the db; see <code>formats</code>.</dd>

 <dt>typed.gts</dt>
<dd>named list of genotype objects; see <code>formats.</code></dd>

 <dt>reference.profiles</dt>
<dd>data frame containing reference.profiles in DNAmixtures format</dd>

</dl>

checkdata: Check data for absences of markers or allele values

Description

Usage

Value

Arguments

Author

Examples