export_chord_diagram

This function creates an HTML chord diagram visualization for ABC connections,
properly coloring the arcs based on whether each term is an A, B, or C term.

A suite of tools for literature-based discovery in biomedical research.
Provides functions for retrieving scientific articles from 'PubMed' and
other NCBI databases, extracting biomedical entities (diseases, drugs, genes, etc.),
building co-occurrence networks, and applying various discovery models
including 'ABC', 'AnC', 'LSI', and 'BITOLA'. The package also includes
visualization tools for exploring discovered connections.

Chao Liu Liu

LBDiscover

Literature-Based Discovery Tools for Biomedical Research

Chao Liu 

export_chord_diagram function

<dl><dt>abc_results</dt>
<dd>A data frame containing ABC results.</dd>
<dt>output_file</dt>
<dd>File path for the output HTML file.</dd>
<dt>top_n</dt>
<dd>Number of top results to visualize.</dd>
<dt>min_score</dt>
<dd>Minimum score threshold for including connections.</dd>
<dt>open</dt>
<dd>Logical. If TRUE, opens the HTML file after creation.</dd>
<dt>layout_seed</dt>
<dd>Optional seed for layout reproducibility. If NULL, no seed is set.</dd></dl>

Arguments

Export interactive HTML chord diagram for ABC connections — export_chord_diagram

<dl>

<dt>abc_results</dt>
<dd>A data frame containing ABC results.</dd>


<dt>output_file</dt>
<dd>File path for the output HTML file.</dd>


<dt>top_n</dt>
<dd>Number of top results to visualize.</dd>


<dt>min_score</dt>
<dd>Minimum score threshold for including connections.</dd>


<dt>open</dt>
<dd>Logical. If TRUE, opens the HTML file after creation.</dd>


<dt>layout_seed</dt>
<dd>Optional seed for layout reproducibility. If NULL, no seed is set.</dd>

</dl>

export_chord_diagram: Export interactive HTML chord diagram for ABC connections

Description

Usage

Value

Arguments