parse_pubmed_xml

This function parses PubMed XML data into a data frame using streaming
to handle large result sets efficiently.

internal

A suite of tools for literature-based discovery in biomedical research.
Provides functions for retrieving scientific articles from 'PubMed' and
other NCBI databases, extracting biomedical entities (diseases, drugs, genes, etc.),
building co-occurrence networks, and applying various discovery models
including 'ABC', 'AnC', 'LSI', and 'BITOLA'. The package also includes
visualization tools for exploring discovered connections.

Chao Liu Liu

LBDiscover

Literature-Based Discovery Tools for Biomedical Research

Chao Liu 

parse_pubmed_xml function

<dl><dt>xml_data</dt>
<dd>XML data from PubMed.</dd>
<dt>verbose</dt>
<dd>Logical. If TRUE, prints progress information.</dd></dl>

Arguments

Parse PubMed XML data with optimized memory usage — parse_pubmed_xml

<dl>

<dt>xml_data</dt>
<dd>XML data from PubMed.</dd>


<dt>verbose</dt>
<dd>Logical. If TRUE, prints progress information.</dd>

</dl>

parse_pubmed_xml: Parse PubMed XML data with optimized memory usage

Description

Usage

Value

Arguments