LDAdata

<p>LDA data from 11 cell lines, up to 4 biological replicates and up to 6
treatments.</p>

datasets

Cellular cooperation compromises the established method of
calculating clonogenic activity from limiting dilution assay (LDA) data.
This tool provides functions that enable robust analysis in presence or
absence of cellular cooperation. The implemented method incorporates the
same cooperativity module to model the non-linearity associated with
cellular cooperation as known from the colony formation assay (Brix et al.
(2021) <doi:10.1038/s41596-021-00615-0>: "Analysis of clonogenic growth in
vitro." Nature protocols).

Daniel Samaga

LDAcoop

Analysis of Data from Limiting Dilution Assay (LDA) with or
without Cellular Cooperation

Nikko Brix

Benedek Danko

Kirsten Lauber

Horst Zitzelsberger

LDAdata function

<p>data.frame with columns: "name", "replicate", "Group", "S-value",
"# Tested", "# Clonal growth"</p>

Format

LDA (limiting dilution assay) data from a set of cell lines — LDAdata

LDA (limiting dilution assay) data from a set of cell lines

LDAdata: LDA (limiting dilution assay) data from a set of cell lines

Description

Usage

Arguments

Format

Examples