Info.Locus

For a locus, this function computes the minor allelic frequency, the frequency of heterozygous genotypes and the missing value frequency.

Four measures of linkage disequilibrium are provided: the usual r^2
measure, the r^2_S measure (r^2 corrected by the structure
sample), the r^2_V (r^2 corrected by the relatedness of
genotyped individuals), the r^2_VS measure (r^2 corrected by
both the relatedness of genotyped individuals and the structure
of the sample).

Aurélie Siberchicot

LDcorSV

Linkage Disequilibrium Corrected by the Structure and the
Relatedness

David Desrousseaux

Florian Sandron

Christine Cierco-Ayrolles

Brigitte Mangin

Info.Locus function

<dl> <dt>locus</dt>
<dd>Numeric vector of allelic doses.</dd>
	<dt>data</dt>
<dd>Value equal to "G" or "H" depending on the type of data (Genotype or Haplotype).
	Default value is "G".</dd></dl>

Arguments

David Desrousseaux, Florian Sandron, Aurélie Siberchicot, Christine Cierco-Ayrolles and Brigitte Mangin

Author

Information on loci — Info.Locus

<dl>

 <dt>locus</dt>
<dd>Numeric vector of allelic doses.</dd>


	<dt>data</dt>
<dd>Value equal to "G" or "H" depending on the type of data (Genotype or Haplotype).
	Default value is "G".</dd>

</dl>

Info.Locus: Information on loci

Description

Usage

Value

Arguments

Author

Examples