LDcorSV-package

LDcorSV

The package provides a set of functions which aim is to propose four measures of linkage disequilibrium:
- <code>Measure.R2</code>: the usual \(r^2\) measure.
- <code>Measure.R2S</code>: \(r^2\) corrected by the structure of the sample (\(r^2_S\)).
- <code>Measure.R2V</code>: \(r^2\) corrected by the relatedness of genotyped individuals (\(r^2_V\)).
- <code>Measure.R2VS</code>: \(r^2\) corrected by both the relatedness of genotyped individuals and the structure of the sample (\(r^2_VS\)).
- <code>LD.Measures</code>: this function computes the four measures of linkage disequilibrium (\(r^2\), \(r^2_V\), 
\(r^2_S\) and \(r^2_{VS}\)) for a set of loci and gives extra information about them.

package

Four measures of linkage disequilibrium are provided: the usual r^2
measure, the r^2_S measure (r^2 corrected by the structure
sample), the r^2_V (r^2 corrected by the relatedness of
genotyped individuals), the r^2_VS measure (r^2 corrected by
both the relatedness of genotyped individuals and the structure
of the sample).

Aurélie Siberchicot

Linkage Disequilibrium Corrected by the Structure and the
Relatedness

David Desrousseaux

Florian Sandron

Christine Cierco-Ayrolles

Brigitte Mangin

LDcorSV-package function

David Desrousseaux, Florian Sandron, Aurélie Siberchicot, Christine Cierco-Ayrolles and Brigitte Mangin
Maintainer: aurelie.siberchicot@univ-lyon1.fr

Author

LDcorSV — LDcorSV-package

LDcorSV-package: LDcorSV

Description

Arguments

Author

References