gene.annots


 Annotation table giving gene names and descriptions for each protein contained in the STRING network


datasets

Implements the method described in "Network-based analysis of omics data: The LEAN method" [Gwinner Boulday (2016) <DOI:10.1093/bioinformatics/btw676>]
Given a protein interaction network and a list of p-values describing a measure of interest (as e.g. differential gene expression) this method
computes an enrichment p-value for the protein neighborhood of each gene and compares it to a background distribution of randomly drawn p-values.
The resulting scores are corrected for multiple testing and significant hits are returned in tabular format.

Frederik Gwinner

LEANR

Finds "Local Subnetworks" Within an Interaction Network which
Show Enrichment for Differentially Expressed Genes

gene.annots function

A data frame with 7342 observations on the following 4 variables.
  <dl> </dl> 

gene.annots: Annotation for STRING protein Ids

Description

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Details

Examples