LEAPFrOG-package:
Likelihood Estimation of Admixture in Parents From Offspring Genotypes
Description
Takes genotype data for a single individual, and allele frequencies for multiple populations, and returns estimations of admixture proportions for the individual, as well as the admixture proportion of their two parents.
Details
|
Package: |
| LEAPFROG |
|
Type: |
| Package |
|
Version: |
| 1.0 |
|
Date: |
| 2011-06-08 |
|
License: |
| GPL |
|
LazyLoad: |
| yes |
Use LEAPFrOG when regular genotype data is available (0,1 or 2 alleles at each SNP).
Use LEAPFrOG_EM when phased haplotypes are available.
Plot results using LEAPFrOG_plot
References
Crouch & Weale (2011), European Journal of Human Genetics