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LMGene (version 2.28.0)
LMGene Software for Data Transformation and Identification of Differentially Expressed Genes in Gene Expression Arrays
Description
LMGene package for analysis of microarray data using a linear model and glog data transformation
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Version
Version
2.28.0
2.26.0
2.24.0
2.22.0
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Monthly Downloads
86
Version
2.28.0
License
LGPL
Maintainer
Blythe DurbinJohnson
Last Published
July 24th, 2013
Functions in LMGene (2.28.0)
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sample.mat
Sample array data for LMGene package
psmeans
Function to take means of probesets.
LMGene
LMGene main function
pvadjust
P-value adjusting function
sample.eS
Sample array data for LMGene
glog
Generalized log transformation function
neweS
Coerce a matrix to class ExpressionSet
plotMeanSD
Plotting function for gene means and standard deviations
tranest
Glog transformation parameter estimation function
norm
Normalization function
sample.ind
Sample probeset index vector
lnormeS
Function to apply lowess normalization to an expression set.
transeS
Function to apply the glog transform to an expression set.
lnorm
Lowess normalization function
genediff
Gene-by-gene and posterior p-value calculation function.
tranestAffyProbeLevel
Glog transformation parameter estimation function for probe-level Affymetrix expression data
vlist
Sample experimental/phenotype data for LMGene package
rowaov
Gene by gene ANOVA function