LOGICOIL (version 0.99.0)

LOGICOIL-package: Predict oligomerization state of coiled-coil sequences.

Description

Functions for predicting the oligomeric state of user-defined coiled-coil sequencse. Those functions allow the user to separate between antiparallel dimer, parallel dimers, trimers and higher-order coiled coils.

Details

Package:

LOGICOIL

Type:

Package

Version:

1.0

Date:

2014-04-12

License:

What license is it under?

Functions in the LOGICOIL package allow users to apply the LOGICOIL prediction algorithm to predict the oligomeric state of coiled-coil sequences.

References

Thomas L. Vincent, Peter J. Green and Dek N. Woolfson. "LOGICOIL-multi-state prediction of coiled-coil oligomeric state", 29(1), pp69-76, Bioinformatics, (2013). DOI: 10.1093/bioinformatics/bts648

Examples

library(nnet)
data(pssm)
data(Model_Parameters)
data(LOGICOILfit)

score <- LOGICOIL("GCN4wt", "MKQLEDKVEELLSKNYHLENEVARLKKLV", 
    "abcdefgabcdefgabcdefgabcdefga", plot.result=TRUE)

# print output
print(score)