Usage
clusterplot(clusmat, label = NULL, at = NULL, main = "Clusterplot", xlim = NULL, ylim = NULL, xlab = "Columns", ylab = "Rows", xaxt = "s", xlabels = NULL, las = 1, fromto = c(0.05, 0.95), colpal = "standardheat", nrcolors = 25, outer.col = "light grey", quartiles.col = c("black", "grey", "grey"), add.quartiles = TRUE, separate = TRUE, revpal = FALSE, size = TRUE, alpha = NULL, smooth = FALSE, df = 3, ...)Arguments
clusmat
matrix or list with numerical entries, quantiles of rows resp. vectors will define colors
label
if multiple clusters should be plotted: vector with labels, which assigns rows to clusters
at
at which x-positions the columns should occur
main
the title(s) of the plot(s)
xlim
xlimits, standard graphics parameter
ylim
ylimits, standard graphics parameter
xlab
x-axis legend, standard graphics parameter
ylab
y-axis legend, standard graphics parameter
xaxt
should an x axis be plotted at all? (="n" if not)
xlabels
text added as x-axis labels
las
las=1: horizontal text, las=2: vertical text (x-axis labels)
fromto
the range of quantiles that should be plotted
colpal
colorpalettes assigned to sorted labels label ( see disco() )
nrcolors
the number of colors to use
outer.col
color of the outlier lines
quartiles.col
color of quartile lines
add.quartiles
should the quartile lines be plotted
separate
should clusters be plotted in subsequent figures
revpal
should the colorpalette be inverted
size
should the size of each cluster be added to the title
smooth
should quantiles be smoothed
alpha
alpha value for color opacity
...
additional parameters to be passed to points and plot