Depict a numeric matrix or list utilizing the underlying distribution quantiles of one dimension in a color encoded fashion.
fusionplot(
x,
y,
label = NULL,
main = NULL,
xlim = NULL,
ylim = NULL,
fromto = c(0.05, 0.95),
colpal = "standardheat",
simulate = FALSE,
daltonize = FALSE,
cvd = "p",
nrcol = 25,
outer.col = "lightgrey",
quartiles.col = c("grey", "black", "grey"),
add.quartiles = TRUE,
separate = TRUE,
rev = FALSE,
size = TRUE,
alpha = NULL,
axes = TRUE,
...
)
a numeric vector.
a numeric vector.
a character vector assigning rows/elements of 'input' to clusters (if specified, multiple clusters can be depicted in different colors and/or subsequent plots).
title(s) of the plot, standard graphics parameter.
x limits, standard graphics parameter.
y limits, standard graphics parameter.
a numeric vector containing the range of quantiles (between 0 and 1) to be plotted.
a character vector containing R built-in color names or a name of a LSD
colorpalette as a character string (see disco() or disco
).
logical: if TRUE
(FALSE
by default), a converted colorpalette is used to simulate dichromat vision according to http://www.daltonize.org (see daltonize
).
logical: if TRUE
(FALSE
by default), a converted colorpalette is used to enhance dichromat vision according to http://www.daltonize.org (see daltonize
).
character string implying the type of color vision deficiency ("p" for protanope, "d" for deuteranope or "t" for tritanope).
a non-negative integer specifying the number of colors to be used (defaults to 25, if not specified).
R built-in color to be used for outlier lines (lines outside of 'fromto').
a character vector containing three R built-in colors for quartile lines (c('0.25','0.5','0.75')).
logical: if TRUE
(by default), lines are plotted corresponding to the quartiles.
if TRUE
(by default), different clusters are depicted in subsequent plots.
logical: if TRUE
(FALSE
by default), a reversed colorpalette is used.
logical: if TRUE
(by default), the size of each cluster is added to the title of the respective plot.
alpha value: a two-digit integer between 01 and 99 for color opacity, i.e. appearance of partial or full transparency (usage omitted by default).
logical: if TRUE
(by default), a box and axes are added to the plot (if FALSE
, custom specification of axes can be achieved via basic R graphics functions).
additional parameters to be passed to points and plot.
# NOT RUN {
nr = 750
x = 1:nr/300
y = c(rnorm(nr)+sin(2*x)*3,rnorm(nr)+sin(2*x+pi/2)*3)
x = c(x,x)
labs = paste("cluster",c(rep(c(1,2),each = nr)))
colpals = c("oranges","pubu")
qcol = c("transparent","black","transparent")
fusionplot(x,y,labs,separate=FALSE,colpal=colpals,alpha=75,quartiles.col = qcol)
# }
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