extract_estimation_info_graph

Title Internal Function used to extact input needed from graph input for liability estimation

Implementation of several phenotype-based family genetic risk scores
with unified input data and data preparation functions to help facilitate
the required data preparation and management. The implemented family genetic
risk scores are the extended liability threshold model conditional on family history (LT-FH++)
from Pedersen (2022) <doi:10.1016/j.ajhg.2022.01.009> and Pedersen (2023) <https://www.nature.com/articles/s41467-023-41210-z>,
Pearson-Aitken Family Genetic Risk Scores (PA-FGRS) from Krebs (2024) <doi:10.1016/j.ajhg.2024.09.009>,
and family genetic risk score by Kendler (2021) <doi:10.1001/jamapsychiatry.2021.0336>.

Emil Michael Pedersen

LTFGRS

Implementation of Several Phenotype-Based Family Genetic Risk
Scores

Jette Steinbach

Lucas Rasmussen

Morten Dybdahl Krebs

extract_estimation_info_graph function

<dl><dt>cur_fam_graph</dt>
<dd>neightbourhood graph of degree n around proband</dd>
<dt>cur_fid</dt>
<dd>proband ID</dd>
<dt>h2</dt>
<dd>heritability value from estimate_liability</dd>
<dt>pid</dt>
<dd>Name of column of personal ID</dd>
<dt>add_ind</dt>
<dd>Whether the genetic liability be added. Default is TRUE.</dd></dl>

Arguments

Title Internal Function used to extact input needed from graph input for liability estimation — extract_estimation_info_graph

<dl>

<dt>cur_fam_graph</dt>
<dd>neightbourhood graph of degree n around proband</dd>


<dt>cur_fid</dt>
<dd>proband ID</dd>


<dt>h2</dt>
<dd>heritability value from estimate_liability</dd>


<dt>pid</dt>
<dd>Name of column of personal ID</dd>


<dt>add_ind</dt>
<dd>Whether the genetic liability be added. Default is TRUE.</dd>

</dl>

extract_estimation_info_graph: Title Internal Function used to extact input needed from graph input for liability estimation

Description

Usage

Value

Arguments