fixSexCoding

Internal function used to assist in fixing sex coding separately from id coding type.

Implementation of several phenotype-based family genetic risk scores
with unified input data and data preparation functions to help facilitate
the required data preparation and management. The implemented family genetic
risk scores are the extended liability threshold model conditional on family history (LT-FH++)
from Pedersen (2022) <doi:10.1016/j.ajhg.2022.01.009> and Pedersen (2023) <https://www.nature.com/articles/s41467-023-41210-z>,
Pearson-Aitken Family Genetic Risk Scores (PA-FGRS) from Krebs (2024) <doi:10.1016/j.ajhg.2024.09.009>,
and family genetic risk score by Kendler (2021) <doi:10.1001/jamapsychiatry.2021.0336>.

Emil Michael Pedersen

LTFGRS

Implementation of Several Phenotype-Based Family Genetic Risk
Scores

Jette Steinbach

Lucas Rasmussen

Morten Dybdahl Krebs

fixSexCoding function

<dl><dt>x</dt>
<dd>current row to check against</dd>
<dt>sex_coding</dt>
<dd>logical. Is sex coded as character?</dd>
<dt>dadid</dt>
<dd>column name of father ids</dd>
<dt>momid</dt>
<dd>column name of mother ids</dd></dl>

Arguments

Fixing sex coding in trio info — fixSexCoding

<dl>

<dt>x</dt>
<dd>current row to check against</dd>


<dt>sex_coding</dt>
<dd>logical. Is sex coded as character?</dd>


<dt>dadid</dt>
<dd>column name of father ids</dd>


<dt>momid</dt>
<dd>column name of mother ids</dd>

</dl>

fixSexCoding: Fixing sex coding in trio info

Description

Usage

Value

Arguments