add_lm_markers

Compute the aesthetics for markers visualisation.

Allow to visualise data on the NCBI phylogenetic tree as presented in Lifemap <https://lifemap.cnrs.fr/>. It takes as input a dataframe with at least a "taxid" column containing NCBI format TaxIds and allows to draw multiple layers with different visualisation tools.

Aurélie Siberchicot

LifemapR

Data Visualisation on 'Lifemap' Tree

Cassandra Bompard

Damien M. de Vienne

Julien Barnier

add_lm_markers function

<dl><dt>proxy</dt>
<dd>The map to be modified.</dd>
<dt>aes</dt>
<dd>The dataframe containing the aesthetics information (must be of lm_markers class).</dd>
<dt>df</dt>
<dd>The full dataframe.</dd>
<dt>df_visible</dt>
<dd>The dataframe containing visible taxa.</dd>
<dt>group_info</dt>
<dd>The ID of this group of markers.</dd></dl>

Arguments

Compute the aesthetics for markers visualisation. — add_lm_markers

<dl>

<dt>proxy</dt>
<dd>The map to be modified.</dd>


<dt>aes</dt>
<dd>The dataframe containing the aesthetics information (must be of lm_markers class).</dd>


<dt>df</dt>
<dd>The full dataframe.</dd>


<dt>df_visible</dt>
<dd>The dataframe containing visible taxa.</dd>


<dt>group_info</dt>
<dd>The ID of this group of markers.</dd>

</dl>

add_lm_markers: Compute the aesthetics for markers visualisation.

Description

Usage

Value

Arguments