add_lm_piecharts

Compute the aesthetics for discret values visualisation.

Allow to visualise data on the NCBI phylogenetic tree as presented in Lifemap <https://lifemap.cnrs.fr/>. It takes as input a dataframe with at least a "taxid" column containing NCBI format TaxIds and allows to draw multiple layers with different visualisation tools.

Aurélie Siberchicot

LifemapR

Data Visualisation on 'Lifemap' Tree

Cassandra Bompard

Damien M. de Vienne

Julien Barnier

add_lm_piecharts function

<dl><dt>proxy</dt>
<dd>The map to be modified.</dd>
<dt>aes</dt>
<dd>The dataframe containing the aesthetics details (must be of lm_piecharts class).</dd>
<dt>df</dt>
<dd>The full dataframe.</dd>
<dt>df_visible</dt>
<dd>The dataframe containing visible taxa.</dd>
<dt>layer</dt>
<dd>The ID of this group of charts</dd></dl>

Arguments

Compute the aesthetics for discret values visualisation. — add_lm_piecharts

<dl>

<dt>proxy</dt>
<dd>The map to be modified.</dd>


<dt>aes</dt>
<dd>The dataframe containing the aesthetics details (must be of lm_piecharts class).</dd>


<dt>df</dt>
<dd>The full dataframe.</dd>


<dt>df_visible</dt>
<dd>The dataframe containing visible taxa.</dd>


<dt>layer</dt>
<dd>The ID of this group of charts</dd>

</dl>

add_lm_piecharts: Compute the aesthetics for discret values visualisation.

Description

Usage

Value

Arguments