create_matrix

Create a dataframe with pairs of taxids, each taxid and their corresponding values are associated with every one of its ancestors.

Allow to visualise data on the NCBI phylogenetic tree as presented in Lifemap <https://lifemap.cnrs.fr/>. It takes as input a dataframe with at least a "taxid" column containing NCBI format TaxIds and allows to draw multiple layers with different visualisation tools.

Aurélie Siberchicot

LifemapR

Data Visualisation on 'Lifemap' Tree

Cassandra Bompard

Damien M. de Vienne

Julien Barnier

create_matrix function

<dl><dt>df</dt>
<dd>A dataframe containing taxids and values.</dd>
<dt>cols</dt>
<dd>The columns containing the values which needs to be inferred.</dd></dl>

Arguments

Create a dataframe for the ancestry. — create_matrix

<dl>

<dt>df</dt>
<dd>A dataframe containing taxids and values.</dd>


<dt>cols</dt>
<dd>The columns containing the values which needs to be inferred.</dd>

</dl>

create_matrix: Create a dataframe for the ancestry.

Description

Usage

Value

Arguments

Examples