display_option

Compute the different display options.

Allow to visualise data on the NCBI phylogenetic tree as presented in Lifemap <https://lifemap.cnrs.fr/>. It takes as input a dataframe with at least a "taxid" column containing NCBI format TaxIds and allows to draw multiple layers with different visualisation tools.

Aurélie Siberchicot

LifemapR

Data Visualisation on 'Lifemap' Tree

Cassandra Bompard

Damien M. de Vienne

Julien Barnier

display_option function

<dl><dt>m</dt>
<dd>The map to be modified.</dd>
<dt>aes</dt>
<dd>The dataframe containing the aesthetics details</dd>
<dt>df</dt>
<dd>The full dataframe.</dd>
<dt>type</dt>
<dd>A string indicating the type of representation, either "markers" or "discret"</dd>
<dt>leaves</dt>
<dd>The Vector of all the terminal taxids.</dd>
<dt>i</dt>
<dd>The index of the aesthetics.</dd></dl>

Arguments

Compute the different display options. — display_option

<dl>

<dt>m</dt>
<dd>The map to be modified.</dd>


<dt>aes</dt>
<dd>The dataframe containing the aesthetics details</dd>


<dt>df</dt>
<dd>The full dataframe.</dd>


<dt>type</dt>
<dd>A string indicating the type of representation, either "markers" or "discret"</dd>


<dt>leaves</dt>
<dd>The Vector of all the terminal taxids.</dd>


<dt>i</dt>
<dd>The index of the aesthetics.</dd>

</dl>

display_option: Compute the different display options.

Description

Usage

Value

Arguments