lifemap

Initialise a lifemap_obj object.
It can be used to describe aesthetics like the zoom level at which taxids becomes visible...

Allow to visualise data on the NCBI phylogenetic tree as presented in Lifemap <https://lifemap.cnrs.fr/>. It takes as input a dataframe with at least a "taxid" column containing NCBI format TaxIds and allows to draw multiple layers with different visualisation tools.

Aurélie Siberchicot

LifemapR

Data Visualisation on 'Lifemap' Tree

Cassandra Bompard

Damien M. de Vienne

Julien Barnier

lifemap function

<dl><dt>lm_obj</dt>
<dd>lifemap_obj object used for data visualisation.</dd>
<dt>zoom</dt>
<dd>The level of zoom for which values are displayed (if zoom = 0 only the nodes at the current zoom level or lower can have their values displayed).</dd></dl>

Arguments

Initialise a new Lifemap visualisation. — lifemap

<dl>

<dt>lm_obj</dt>
<dd>lifemap_obj object used for data visualisation.</dd>


<dt>zoom</dt>
<dd>The level of zoom for which values are displayed (if zoom = 0 only the nodes at the current zoom level or lower can have their values displayed).</dd>

</dl>

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lifemap: Initialise a new Lifemap visualisation.

Description

Usage

Value

Arguments