LipidMS (version 1.0.0)

createLipidDB: Customizable lipid DBs creator

Description

It allows to create easy-customizable lipid DBs for annotation with LipidMS package.

Usage

createLipidDB(lipid, chains, chains2)

Arguments

lipid

character value indicating the class of lipid. See Details.

chains

character vector indicating the FA chains to be employed

chains2

character vector containing the sphingoid bases to be employed if required.

Value

List with the requested dbs (data frames)

Details

lipidClass argument needs to be one of the following character values: "Cer", "CerP", "GlcCer", "SM", "Carnitine", "CE", "FA", "HFA", "Sph" (sphingoid bases), "SphP", "MG", "LPA", , "LPC", "LPE", "LPG", "LPI", "LPS", "FAHFA", "DG", "PC", "PE", "PG", "PI", "PS", "PA", "TG", "CL" or "all".

Examples

# NOT RUN {
fas <- c("8:0", "10:0", "12:0", "14:0", "14:1", "15:0", "16:0", "16:1",
"17:0", "18:0", "18:1", "18:2", "18:3", "18:4", "20:0", "20:1", "20:2",
"20:3", "20:4", "20:5", "22:0", "22:1", "22:2", "22:3", "22:4", "22:5",
"22:6", "24:0", "24:1", "26:0")
sph <- c("16:0", "16:1", "18:0", "18:1")
newdb <- createLipidDB(lipid = "PC", chains = fas, chains2 = sph)

# }