getInclusionList: Obtain an inclusion list from the annotation results
Description
Obtain an inclusion list for the identified lipids.
Usage
getInclusionList(df, dbs)
Arguments
df
data frame. Output of identification functions (results table from
an msobject or feature table from an msbatch).
dbs
list of data bases required for annotation. By default, dbs
contains the required data frames based on the default fragmentation rules.
If these rules are modified, dbs may need to be supplied. See createLipidDB
and assignDB.
Value
Data frame with 6 columns: formula, RT, neutral mass, m/z, adduct
and the LipidMSid.
# NOT RUN {devtools::install_github("maialba3/LipidMSdata2")
library(LipidMS)
msobject <- idPOS(LipidMSdata2::msobjectDIApos)
getInclusionList(msobject)
# }# NOT RUN {# }