LiquidAssociation (version 1.26.0)

LiquidAssociation-package: Liquid Associaiton Package

Description

The LiquidAssociation package provide methods to examine a special kind of three-way interaction called liquid association. The term liquid association was first proposed by contains functions for calculate direct and model-based estimators for liquid associaiton. It also provides functions for testing the existence of liquid associaiton given a gene triplet data.

Details

Package:

LiquidAssociation

Type:

Package

Version:

1.0.4

Date:

2009-10-05

License:

GPL version 2 or newer

LazyLoad:

yes

GLA LA CNM.full CNM.simple getsGLA getsLA plotGLA

References

Ker-Chau Li, Genome-wide coexpression dynamics: theory and application (2002). PNAS 99 (26): 16875-16880.

Yen-Yi Ho, Leslie Cope, Thomas A. Louis, and Giovanni Parmigiani, GENERALIZED LIQUID ASSOCIATION (April 2009). Johns Hopkins University, Dept. of Biostatistics Working Papers. Working Paper 183. http://www.bepress.com/jhubiostat/paper183

Examples

data<-matrix(rnorm(300), ncol=3)

colnames(data)<-c("Gene1", "Gene2", "Gene3")

FitCNM.full<-CNM.full(data)

FitCNM.full