network_visual_re

Re-visualize network plot from <code>network_visual</code> or <code>network_withdiff</code>

Provides a robust collection of functions tailored for microbial ecology analysis, encompassing both data analysis and visualization. It introduces an encapsulation feature that streamlines the process into a summary object. With the initial configuration of this summary object, users can execute a wide range of analyses with a single line of code, requiring only two essential parameters for setup. The package delivers comprehensive outputs including analysis objects, statistical outcomes, and visualization-ready data, enhancing the efficiency of research workflows. Designed with user-friendliness in mind, it caters to both novices and seasoned researchers, offering an intuitive interface coupled with adaptable customization options to meet diverse analytical needs.

Ningqi Wang

LorMe

Lightening One-Code Resolving Microbial Ecology Solution

Yaozhong Zhang

Gaofei Jiang

network_visual_re function

<dl><dt>network_visual_obj</dt>
<dd>Network object from <code>network_visual</code> or <code>network_withdiff</code></dd>
<dt>module_paint</dt>
<dd>Logical. If network module should be painted. Only work for network object from <code>network_withdiff</code>.</dd>
<dt>module_num</dt>
<dd>Numeric indicating which module to be painted.</dd>
<dt>module_palette</dt>
<dd>Character string with at least two elements. Palette for painting modules.</dd>
<dt>vertex.size</dt>
<dd>Numeric. The size of the vertices, default:6. Only for network object from <code>network_visual</code></dd>
<dt>vertex.shape</dt>
<dd>Character. The shape of vertices, default: "circle"</dd></dl>

Arguments

Re-visualize network plot from network_visual or network_withdiff — network_visual_re

<dl>

<dt>network_visual_obj</dt>
<dd>Network object from <code>network_visual</code> or <code>network_withdiff</code></dd>


<dt>module_paint</dt>
<dd>Logical. If network module should be painted. Only work for network object from <code>network_withdiff</code>.</dd>


<dt>module_num</dt>
<dd>Numeric indicating which module to be painted.</dd>


<dt>module_palette</dt>
<dd>Character string with at least two elements. Palette for painting modules.</dd>


<dt>vertex.size</dt>
<dd>Numeric. The size of the vertices, default:6. Only for network object from <code>network_visual</code></dd>


<dt>vertex.shape</dt>
<dd>Character. The shape of vertices, default: "circle"</dd>

</dl>

network_visual_re: Re-visualize network plot from `network_visual` or `network_withdiff`

Description

Usage

Value

Arguments