add_tree

Attach phylogenetic tree to the LorMe object

Provides a robust collection of functions tailored for microbial ecology analysis, encompassing both data analysis and visualization. It introduces an encapsulation feature that streamlines the process into a summary object. With the initial configuration of this summary object, users can execute a wide range of analyses with a single line of code, requiring only two essential parameters for setup. The package delivers comprehensive outputs including analysis objects, statistical outcomes, and visualization-ready data, enhancing the efficiency of research workflows. Designed with user-friendliness in mind, it caters to both novices and seasoned researchers, offering an intuitive interface coupled with adaptable customization options to meet diverse analytical needs.

Ningqi Wang

LorMe

Lightweight One-Line Resolving Microbial Ecology Program

Yaozhong Zhang

Gaofei Jiang

add_tree function

<dl><dt>taxobj</dt>
<dd>One LorMe object. Should be generated from <code>tax_summary</code></dd>
<dt>tree</dt>
<dd>The phylogenetic tree. Recommanded to load by <code>read.tree</code> or <code>phy_tree</code></dd></dl>

Arguments

Attach phylogenetic tree to the LorMe object — add_tree

<dl>

<dt>taxobj</dt>
<dd>One LorMe object. Should be generated from <code>tax_summary</code></dd>


<dt>tree</dt>
<dd>The phylogenetic tree. Recommanded to load by <code>read.tree</code> or <code>phy_tree</code></dd>

</dl>

add_tree: Attach phylogenetic tree to the LorMe object

Description

Usage

Value

Arguments

Examples