determineGroupComps

samples1

A vector of sample names from the other group, if we want to
specify between-group comparisons

samples2

'within' or 'between'. 'within' returns all the sample pairs
within samples1, 'between' returns all the sample pairs
between samples1 and samples2

type


Takes in a vector of strings of sample names and returns strings of
all the comparisons, either within a testing group or between testing groups.
 This is not intended to be called directly by the user.


This package identifies statistically significantly differentially
methylated regions of CpGs. It uses kernel methods (the Maximum Mean
Discrepancy) to measure differences in methylation profiles, and relates
these to inter-replicate changes, whilst accounting for variation in
coverage profiles.

Tom Mayo

Identifies differentially methylated regions across testing groups

determineGroupComps function

Takes in a vector of strings of sample names and returns strings of
all the comparisons, either within a testing group or between testing groups.
 This is not intended to be called directly by the user.

determineGroupComps: Creates strings of sample pair comparisons

Description

Usage

Arguments

Value