findComps

A matrix containing the M3D test-statistic, the difference the
 full and methylation blind metrics,
for each region in the CpGs object. Each column is a comparison between two
 samples, which are described in the column names.

A vector of sample pairs of the form 'sample1 vs sample2' as
returned from determineGroupComps

samples


Returns the columns of the test-statistic matrix that refer to specific
 samples. This is not intended to be called directly by the user.


This package identifies statistically significantly differentially
methylated regions of CpGs. It uses kernel methods (the Maximum Mean
Discrepancy) to measure differences in methylation profiles, and relates
these to inter-replicate changes, whilst accounting for variation in
coverage profiles.

Tom Mayo

Identifies differentially methylated regions across testing groups

findComps function

Returns the columns of the test-statistic matrix that refer to specific
 samples. This is not intended to be called directly by the user.

findComps: Finds columns in the M3D test-statistic matrix

Description

Usage

Arguments

Value