MACP (version 0.1.0)

get_DenoisedNet: Denoising Predicted Protein-Protein Interactions

Description

This function removes the noise in the form of false positive edges in the predicted networks using network topology.

Usage

get_DenoisedNet(ppi)

Value

A data.frame containing denoised network.

Arguments

ppi

Interactions data containing id1-id2-weight triplets.

Author

Matineh Rahmatbakhsh,

Details

get_DenoisedNet

Examples

# high-confidence network as input
ppi <-
read.table(system.file("extdata/ppi_input_ClusterONE.txt",
package="MACP"),
quote="\"", comment.char="")
# Perform network denoising
denoisetNet <- get_DenoisedNet(ppi)