fish215

Observable genotypes (up to possibly duplicated alleles) of 215 lake trout (Salvelinus namaycush) collected from 11 lakes in Ontario, Canada.

Tools for the analysis of population differences
using the Major Histocompatibility Complex (MHC) genotypes of samples
having a variable number of alleles (1-4) recorded for each
individual.  A hierarchical Dirichlet-Multinomial model on the
genotype counts is used to pool small samples from multiple
populations for pairwise tests of equality.  Bayesian inference is
implemented via the 'rstan' package.  Bootstrapped and posterior
p-values are provided for chi-squared and likelihood ratio tests of
equal genotype probabilities.

Martin Lysy

MADPop

MHC Allele-Based Differencing Between Populations

Peter W.J. Kim

Terin Robinson

fish215 function

A <code>data.frame</code> with 215 rows and 5 columns. The first column is an (optional) vector of population identifiers. The next four columns contain the recorded genotype for each observation (row). Each row contains up to four distinct allele identifiers in any order. Missing alleles should be denoted by <code>NA</code>, or "", but not both.

fish215: Genotypes of lake trout from Ontario, Canada

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Examples