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MALDIquantForeign (version 0.3)

Import/Export routines for MALDIquant

Description

This package allows to read (tab, csv, Bruker fid, Ciphergen XML, mzXML, mzML) and write (tab, csv, msd, mzML) different file formats of mass spectrometry data into/from MALDIquant objects.

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Install

install.packages('MALDIquantForeign')

Monthly Downloads

458

Version

0.3

License

GPL (>= 3)

Issues

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Repository

http://strimmerlab.org/software/maldiquant/ https://github.com/sgibb/MALDIquantForeign/

Maintainer

Sebastian Gibb

Last Published

March 1st, 2013

Functions in MALDIquantForeign (0.3)

exportMsd,MassSpectrum-method

Export to MSD files

importCiphergenXml

Import Ciphergen XML files

import

Import files

supportedFileFormats

Supported file formats

.parseMzMl

Parse mzML files.

MALDIquantForeign-package

Import/Export routines for MALDIquant

Converts double to base64 character.

exportMzMl,MassSpectrum-method

Export to mzML files

exportTab,AbstractMassObject-method

Export to text files

.fileExtension

Determine file extension

export,AbstractMassObject-method

Export files

importBrukerFlex

Import Bruker Daltonics *flex files

.parseCiphergenXml

Parse Ciphergen XML files.

.cleanFilename

This function removes spaces and punctuations from filenames.

.composeFilename,AbstractMassObject-method

This method creates a filename for a AbstractMassObject object.