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MALDIquantForeign (version 0.5.1)

Import/Export routines for MALDIquant

Description

This package allows to read (tab, csv, Bruker fid, Ciphergen XML, mzXML, mzML, imzML, Analyze 7.5) and write (tab, csv, msd, mzML) different file formats of mass spectrometry data into/from MALDIquant objects.

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Version

Install

install.packages('MALDIquantForeign')

Monthly Downloads

458

Version

0.5.1

License

GPL (>= 3)

Issues

2

Pull Requests

1

Stars

12

Forks

4

Maintainer

Sebastian Gibb

Last Published

September 18th, 2013

Functions in MALDIquantForeign (0.5.1)

.base64encode

Converts double to base64 character.
.mzMlHandlers

Parse mzML files.
.cleanFilename

This function removes spaces and punctuations from filenames.
importAnalyze

Import Analyze 7.5 files
MALDIquantForeign-package

Import/Export routines for MALDIquant
exportMzMl,MassSpectrum-method

Export to mzML files
importImzMl

Import imzML files
importCiphergenXml

Import Ciphergen XML files
exportTab,AbstractMassObject-method

Export to text files
importBrukerFlex

Import Bruker Daltonics *flex files
importMzXml

Import mzXML files
exportMsd,MassSpectrum-method

Export to MSD files
importMzMl

Import mzML files
importTxt

Import text files
.composeFilename,AbstractMassObject-method

This method creates a filename for a AbstractMassObject object.
.parseCiphergenXml

Parse Ciphergen XML files.
.parseMzMl

Parse mzML files.
export,AbstractMassObject-method

Export files
.fileExtension

Determine file extension
import

Import files
supportedFileFormats

Supported file formats