MALDIrppa (version 1.0.2)

summary.scSpectra: Numerical summary of screenSpectra objects

Description

This is a summary method for scSpectra objects that generates a numerical summary of the settings and results from applying screenSpectra to identify potential faulty, low-quality raw mass spectra.

Usage

# S3 method for scSpectra
summary(object, ncases = 10, ...)

Arguments

object

A scSpectra object as generated from screenSpectra.

ncases

Number of cases shown in the results table.

...

Other arguments.

Details

A table is generated that includes details of the numerical estimations along with mass spectra ID, A score and the label for each mass spectra, either potentially low-quality (failure) or good-quality (success).

See Also

See screenSpectra and plot.scSpectra.

Examples

# NOT RUN {
# Load example data

data(spectra) # list of MassSpectra objects

sc.results <- screenSpectra(spectra)
summary(sc.results)
# }