MAMA (version 1.0.2)

MAP.genes: Function to do assign probesets IDs to patterns

Description

Function makes a list of vectors of probeset IDs. One vector contains probesets with one observed pattern.

Usage

MAP.genes(resx, value.dis, files = TRUE)

Arguments

resx

data.frame, rows refer to patterns, columns to pattern description - see in examples

value.dis

Matrix of observed patterns: binary matrix, columns refer to studies, rows to genes,

files

logical, when TRUE, files with probeset IDs are written too

Value

• list, each slot is vector of gene names

Examples

#> t(resx)
#                        111 101    110    011
#n.sig[which(n.sig > 1)]   3   2  2.000  2.000
#n.strong                 32 127 20.000  6.000
#n.soft                   32 159 52.000 38.000
#p.soft                    0   0  0.000  0.000
#p.strong                  0   0  0.000  0.002
#permu.soft                0   0  0.000  0.000
#permu.strong              0   0  0.001  0.008