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MAMA (version 1.0.2)

MAPsig2: Pattern signifficance

Description

Function computes significance of observed number of strong and soft matches by randomly assigning group labels in each study.

Usage

MAPsig2(dataset,value.dis, unique.pat, B = 1000)

Arguments

dataset
vector with datasets names - function loads files paste("random_stat_",dataset[i],".Rdata"
value.dis
binary matrix from T-statistics
unique.pat
unique meta-analysis patterns
B
number of iterations

Value

  • data.frame with p-values for number of oberved soft and strong matches

References

Yang, X., Bentink, S. and Spang, R. 2005, Detecting Common Gene Expression Patterns in Multiple Cancer Outcome Entities, Biomedical Microdevices, Vol.7:3, pp. 247-251