MAMA (version 1.0.2)

conting.tab: Contingency table from gene lists

Description

Function to make a contingency table from gene lists as in VennMapper program.

Usage

conting.tab(lists)

Arguments

lists

list of vectors. Each vector refers to a method and contains names of significant genes

Value

• Matrix with counts of matches in pairs of gene lists

Details

Simmilar to gene.list and Z, but provides different output

References

Smid, M., Dorssers, L. C. J. and Jenster, G. 2003, Venn Mapping: clustering of heterologous microarray data based on the number of co-occurring differentially expressed genes, Bioinformatics, vol. 19 no. 16 2003

See Also

Z,gene.list

Examples

lists<-list(Method1=c("Gene_A", "Gene_V","Gene_S","Gene_C","Gene_U","Gene_D","Gene_E","Gene_G","Gene_W"), 
  Method2=c("Gene_D","Gene_W","Gene_G","Gene_E","Gene_H","Gene_X"),
  Method3=c("Gene_L","Gene_K","Gene_J","Gene_M","Gene_V","Gene_T","Gene_R","Gene_U"))
conting.tab(lists)