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MAMA (version 2.1.0)

plot.SOGLresult: Function to plot an object of class SOGLresult

Description

Function draws three plots presented for results of meta-analysis by Similarity of Ordered Gene List method

Usage

## S3 method for class 'SOGLresult':
plot(x, which, ...)

Arguments

x
SOGLresult object, provided by function performSOGL
which
Character indicator which plot has to be drawn, see Details
...
arguments to plot function

Details

If which="alpha selection" {Considered alphas and corresponding pAUC are plotted. Red vertical line signs selected alpha.} If which="density"{Estimated density of random (in black) and subsampled score (in red)} If which="empirical CI"{Empirical confidence intervals and observed number of overlapping genes}

References

Yang, X., Bentink, S., Scheid, S. Spang, R., Similarities of ordered gene lists, 2005