MAMA (version 2.2.1)

plot.SOGLresult: Function to plot an object of class SOGLresult

Description

Function draws three plots presented for results of meta-analysis by Similarity of Ordered Gene List method

Usage

"plot"(x, which, ...)

Arguments

x

SOGLresult object, provided by function performSOGL

which

Character indicator which plot has to be drawn, see Details

...

arguments to plot function

Details

If which="alpha selection" Considered alphas and corresponding pAUC are plotted. Red vertical line signs selected alpha. If which="density"Estimated density of random (in black) and subsampled score (in red) If which="empirical CI"Empirical confidence intervals and observed number of overlapping genes

References

Yang, X., Bentink, S., Scheid, S. Spang, R., Similarities of ordered gene lists, 2005