MANOR (version 1.44.0)

sort: Sorting for normalized arrayCGH objects

Description

Sorts clone-level information of a normalized arrayCGH object.

Usage

"sort"(x, decreasing = FALSE, position.var="Position", chromosome.var="Chromosome", ...)

Arguments

x

an object of type arrayCGH.

decreasing

(for compatibility with sort class) currently unused.

position.var

name of position variable.

chromosome.var

name of chromosome variable.

...

further arguments to be passed to sort.

See Also

norm.arrayCGH

Examples

data(spatial)

## sort a normalized array by clone position
gradient.norm <- sort(gradient.norm)

report.plot(gradient.norm, main="Genomic profile after normalization")