MAPITR_SimData_Pathways

<p>A simulated set of pathways for use in 
vignettes</p>

data

A genetic analysis tool and variance component
model for identifying marginal epistasis between pathways
and the rest of the genome. 'MAPITR' uses as input a matrix
of genotypes, a vector of phenotypes, and a list of
pathways. 'MAPITR' then iteratively tests each pathway for
epistasis between any variants within the pathway versus
any variants remaining in the rest of the genome. 'MAPITR'
returns results in the form of p-values for every pathway
indicating whether the null model of there being no
epistatic interactions between a pathway and the rest of
the genome can be rejected.

Michael Turchin

MAPITR

MArginal ePIstasis Test for Regions

Gregory Darnell

Lorin Crawford

Sohini Ramachandran

Peter Carbonetto

MAPITR_SimData_Pathways function

<p>A data frame with 5 rows (pathways) and 2 variables 
(pathway name, comma-separated list of pathway column indices)</p>

Format

MAPITR SimData Pathways — MAPITR_SimData_Pathways

MAPITR SimData Pathways

MAPITR_SimData_Pathways: MAPITR SimData Pathways

Description

Arguments

Format