MARVEL (version 1.4.0)

AnnotateGenes.10x: Annotate splice junctions

Description

Annotates the each gene in the gene metadata with the gene type, e.g. protein-coding, antisense etc.. Annotations are retrieved from GTF. Only genes found in gene metadata and GTF will be retained.

Usage

AnnotateGenes.10x(MarvelObject)

Value

An object of class S3 containing the updated slots MarvelObject$gene.metadata and gene.norm.matrix.

Arguments

MarvelObject

Marvel object. S3 object generated from CreateMarvelObject.10x function.

Examples

# Load un-processed MARVEL object
marvel.demo.10x.raw <- readRDS(system.file("extdata/data",
                               "marvel.demo.10x.raw.rds",
                               package="MARVEL")
                               )

# Annotate gene metadata
marvel.demo.10x <- AnnotateGenes.10x(MarvelObject=marvel.demo.10x.raw)